Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10032380	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510553	0.82[EUR][1000 genomes]
rs13106620	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16849267	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16849364	0.94[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849366	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28821191	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34681098	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34787727	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34898621	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35215741	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3822100	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs4364229	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4446279	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[TSI][hapmap]
rs4591567	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4640638	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs667	0.81[EUR][1000 genomes]
rs6829532	0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs6829551	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834059	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6836787	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845493	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74159000-74170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:74159000-74174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:74164800-74165600	Enhancers	HepG2	liver
4	chr4:74164800-74165800	Strong transcription	Liver	Liver

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