Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10002756	0.95[JPT][hapmap]
rs10020432	1.00[JPT][hapmap]
rs10031441	1.00[JPT][hapmap]
rs10034509	0.90[YRI][hapmap]
rs10049835	0.81[YRI][hapmap]
rs12500723	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12504308	0.81[ASN][1000 genomes]
rs12506899	1.00[JPT][hapmap]
rs12510553	0.82[AMR][1000 genomes]
rs13106620	0.83[EUR][1000 genomes]
rs16849267	0.81[EUR][1000 genomes]
rs16849364	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes]
rs16849366	0.85[EUR][1000 genomes]
rs16849384	0.81[JPT][hapmap]
rs16849498	0.90[YRI][hapmap]
rs16849508	0.81[JPT][hapmap]
rs2298839	0.80[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs28821191	0.83[EUR][1000 genomes]
rs34681098	0.80[EUR][1000 genomes]
rs34787727	0.84[EUR][1000 genomes]
rs34898621	0.83[EUR][1000 genomes]
rs3796676	0.81[JPT][hapmap]
rs4364229	0.83[EUR][1000 genomes]
rs4446279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4591567	0.81[EUR][1000 genomes]
rs4640638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667	0.81[AMR][1000 genomes]
rs6829532	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs6829551	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs6834059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7660680	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7790	0.90[YRI][hapmap]
rs9995788	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:74303400-74317200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74303600-74315800	Weak transcription	Fetal Intestine Small	intestine
4	chr4:74306400-74309600	Transcr. at gene 5' and 3'	HepG2	liver
5	chr4:74308400-74313400	Weak transcription	NH-A	brain
6	chr4:74308600-74313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:74309200-74310000	Weak transcription	Liver	Liver
8	chr4:74309200-74312000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: