Variant report

Variant	rs2298839
Chromosome Location	chr4:74310844-74310845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74276426..74278467-chr4:74310127..74311716,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10002756	0.88[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10002903	0.83[EUR][1000 genomes]
rs10020432	0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10022167	0.83[ASW][hapmap];0.92[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs10022463	0.83[EUR][1000 genomes]
rs10031441	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504308	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506899	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12510174	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12510553	0.81[ASN][1000 genomes]
rs12510644	0.82[EUR][1000 genomes]
rs12649712	0.88[CEU][hapmap]
rs13104065	0.82[EUR][1000 genomes]
rs13122972	0.83[EUR][1000 genomes]
rs13125875	0.82[EUR][1000 genomes]
rs13138734	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs13150293	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1475934	0.88[CEU][hapmap]
rs16849341	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs16849384	0.92[CEU][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2051512	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs2070849	0.96[CEU][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes]
rs2236766	0.85[EUR][1000 genomes]
rs2276937	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs28532518	0.98[EUR][1000 genomes]
rs28585480	0.85[EUR][1000 genomes]
rs35545060	0.83[EUR][1000 genomes]
rs3756066	0.89[ASW][hapmap];0.84[CEU][hapmap];0.84[TSI][hapmap]
rs3775485	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3775486	0.88[CEU][hapmap]
rs3796676	0.96[CEU][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes]
rs3796677	0.98[EUR][1000 genomes]
rs3796678	0.98[EUR][1000 genomes]
rs3822100	0.80[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4018	0.83[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs4024	0.83[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs4403016	0.96[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs4429703	0.85[EUR][1000 genomes]
rs4446279	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4513532	0.84[CEU][hapmap]
rs4530599	0.84[EUR][1000 genomes]
rs4560374	0.83[EUR][1000 genomes]
rs4575963	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4640638	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4694164	0.82[EUR][1000 genomes]
rs4694600	0.82[EUR][1000 genomes]
rs4694608	0.83[EUR][1000 genomes]
rs4694613	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6446931	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs667	0.80[ASN][1000 genomes]
rs6820167	0.80[CEU][hapmap]
rs6832260	0.85[EUR][1000 genomes]
rs6832557	0.83[EUR][1000 genomes]
rs6834059	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6850155	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs6853164	0.88[CEU][hapmap]
rs714825	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs737241	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7434765	0.85[EUR][1000 genomes]
rs7660680	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668327	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7682895	0.82[EUR][1000 genomes]
rs7688274	0.89[ASW][hapmap];0.83[CEU][hapmap];0.84[TSI][hapmap]
rs962004	0.85[EUR][1000 genomes]
rs9784408	0.84[EUR][1000 genomes]
rs9784582	0.85[EUR][1000 genomes]
rs9996318	0.92[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9999209	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74303400-74317200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:74303600-74315800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:74308400-74313400	Weak transcription	NH-A	brain
4	chr4:74308600-74313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:74309200-74312000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:74309600-74315400	Genic enhancers	HepG2	liver
7	chr4:74310000-74315200	Enhancers	Liver	Liver
8	chr4:74310800-74311000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:74310800-74311000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:74310800-74311400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links