Variant report

Variant	rs4403016
Chromosome Location	chr4:74298215-74298216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr4:74297724-74299044	HepG2	liver:	n/a	n/a
2	HNF4A	chr4:74297809-74298566	HepG2	liver:	n/a	chr4:74298001-74298016 chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298020-74298035 chr4:74298003-74298015
3	FOXA1	chr4:74297610-74299184	HepG2	liver:	n/a	chr4:74298054-74298066
4	MXI1	chr4:74297922-74298714	HepG2	liver:	n/a	n/a
5	TBP	chr4:74297820-74298708	HepG2	liver:	n/a	n/a
6	NR2F2	chr4:74297700-74298871	HepG2	liver:	n/a	n/a
7	CEBPB	chr4:74298204-74298704	HepG2	liver:	n/a	n/a
8	FOXA1	chr4:74297649-74298914	HepG2	liver:	n/a	chr4:74298054-74298066
9	POLR2A	chr4:74298200-74298226	HepG2	liver:	n/a	n/a
10	FOXA1	chr4:74297719-74298702	HepG2	liver:	n/a	chr4:74298054-74298066
11	TEAD4	chr4:74297460-74299532	HepG2	liver:	n/a	n/a
12	NR2F2	chr4:74297658-74299279	HepG2	liver:	n/a	n/a
13	CEBPB	chr4:74297849-74298750	HepG2	liver:	n/a	n/a
14	SMC3	chr4:74297895-74298615	HepG2	liver:	n/a	n/a
15	HNF4A	chr4:74297803-74298747	HepG2	liver:	n/a	chr4:74298001-74298016 chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298020-74298035 chr4:74298003-74298015
16	HNF4A	chr4:74297862-74298658	HepG2	liver:	n/a	chr4:74298001-74298016 chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298020-74298035 chr4:74298003-74298015
17	JUND	chr4:74297790-74298711	HepG2	liver:	n/a	n/a
18	FOXA1	chr4:74297684-74298797	HepG2	liver:	n/a	chr4:74298054-74298066
19	FOXA2	chr4:74297750-74299191	HepG2	liver:	n/a	chr4:74298054-74298066
20	TCF7L2	chr4:74297750-74298899	HepG2	liver:	n/a	n/a
21	POLR2A	chr4:74297826-74298735	HepG2	liver:	n/a	n/a
22	EP300	chr4:74297680-74299300	HepG2	liver:	n/a	chr4:74297977-74297985
23	JUN	chr4:74297462-74298758	HepG2	liver:	n/a	n/a
24	GATA1	chr4:74297904-74299441	K562	blood:	n/a	chr4:74298144-74298155
25	HDAC2	chr4:74297718-74298797	HepG2	liver:	n/a	n/a
26	FOXA2	chr4:74297237-74299126	HepG2	liver:	n/a	chr4:74298054-74298066
27	EP300	chr4:74297652-74298881	HepG2	liver:	n/a	chr4:74297977-74297985
28	HDAC2	chr4:74297831-74298817	HepG2	liver:	n/a	n/a
29	HNF4G	chr4:74297793-74298752	HepG2	liver:	n/a	chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298003-74298015
30	SP1	chr4:74297780-74298866	HepG2	liver:	n/a	n/a
31	MAX	chr4:74297751-74298794	HepG2	liver:	n/a	n/a
32	MAFK	chr4:74297869-74298717	HepG2	liver:	n/a	n/a
33	CEBPB	chr4:74297832-74298800	HepG2	liver:	n/a	n/a
34	NFIC	chr4:74297391-74299267	HepG2	liver:	n/a	n/a
35	EP300	chr4:74298104-74298301	K562	blood:	n/a	n/a
36	EP300	chr4:74297776-74298728	HepG2	liver:	n/a	chr4:74297977-74297985
37	NFIC	chr4:74297754-74298819	HepG2	liver:	n/a	n/a
38	POLR2A	chr4:74297845-74298630	HepG2	liver:	n/a	n/a
39	TAL1	chr4:74298027-74298340	K562	blood:	n/a	chr4:74298147-74298155
40	POLR2A	chr4:74297741-74299266	HepG2	liver:	n/a	n/a
41	FOSL2	chr4:74297836-74298684	HepG2	liver:	n/a	n/a
42	MBD4	chr4:74297739-74299234	HepG2	liver:	n/a	n/a
43	MYBL2	chr4:74297455-74299138	HepG2	liver:	n/a	n/a
44	MAFK	chr4:74297825-74298702	HepG2	liver:	n/a	n/a
45	RXRA	chr4:74297853-74298725	HepG2	liver:	n/a	n/a
46	ARID3A	chr4:74297275-74299086	HepG2	liver:	n/a	n/a
47	MBD4	chr4:74297663-74299109	HepG2	liver:	n/a	n/a
48	MAFF	chr4:74297917-74298713	HepG2	liver:	n/a	n/a
49	MYBL2	chr4:74297712-74298873	HepG2	liver:	n/a	n/a
50	HNF4G	chr4:74297789-74298335	HepG2	liver:	n/a	chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298003-74298015

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74297053..74298875-chr4:74302226..74304748,2	K562	blood:

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002756	0.96[CEU][hapmap]
rs10002903	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10020432	0.96[CEU][hapmap]
rs10022167	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10022463	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10031441	0.96[CEU][hapmap]
rs12503222	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12504308	0.88[EUR][1000 genomes]
rs12506899	0.96[CEU][hapmap]
rs12510644	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12649712	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13104065	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13114289	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13122972	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13125875	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13135376	0.84[AMR][1000 genomes]
rs13138260	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13138734	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1475934	0.93[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16849341	0.96[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16849384	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051510	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051512	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2070849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2236766	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2236767	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276937	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2298839	0.96[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs28532518	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28585480	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35545060	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3756066	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3775485	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775486	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796677	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796678	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4076	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4270557	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4345146	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4429703	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4513532	0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4530599	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4560374	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4575963	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4621399	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4694164	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4694600	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4694608	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4694609	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694613	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56271167	0.81[AMR][1000 genomes]
rs58395249	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6446931	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810745	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6818116	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6820167	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs6832260	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6832557	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6850155	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6853164	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs714825	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7434765	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7660680	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7668327	0.83[EUR][1000 genomes]
rs7682895	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7683385	0.84[AMR][1000 genomes]
rs7688274	0.88[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs962004	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs962005	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9784408	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9784582	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9996318	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9999209	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74296600-74299800	Enhancers	Fetal Intestine Small	intestine
2	chr4:74296800-74299200	Enhancers	Fetal Intestine Large	intestine
3	chr4:74298000-74298400	Flanking Active TSS	HepG2	liver
4	chr4:74298000-74298600	Flanking Active TSS	Liver	Liver
5	chr4:74298000-74299600	Enhancers	K562	blood
6	chr4:74298200-74298400	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:74298200-74298600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:74298200-74298800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:74298200-74299000	Enhancers	Fetal Lung	lung
10	chr4:74298200-74299600	Enhancers	Gastric	stomach
11	chr4:74298200-74299600	Enhancers	Pancreas	Pancrea
12	chr4:74298200-74299600	Enhancers	Stomach Mucosa	stomach

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