Variant report

Variant	rs3796677
Chromosome Location	chr4:74302151-74302152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10002756	0.81[EUR][1000 genomes]
rs10002903	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10020432	0.81[EUR][1000 genomes]
rs10022167	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10022463	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10031441	0.81[EUR][1000 genomes]
rs12503222	0.84[AMR][1000 genomes]
rs12504308	0.94[EUR][1000 genomes]
rs12506899	0.81[EUR][1000 genomes]
rs12510644	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12649712	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13104065	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13114289	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13122972	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13125875	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13135376	0.80[AMR][1000 genomes]
rs13138260	0.82[AMR][1000 genomes]
rs13138734	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1475934	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16849341	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16849384	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051510	0.82[AMR][1000 genomes]
rs2051512	0.84[AMR][1000 genomes]
rs2070849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2236766	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2236767	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2276937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298839	0.98[EUR][1000 genomes]
rs28532518	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28585480	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35545060	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3756066	0.82[AMR][1000 genomes]
rs3775485	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3775486	0.84[AMR][1000 genomes]
rs3796676	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4270557	0.84[AMR][1000 genomes]
rs4345146	0.82[AMR][1000 genomes]
rs4403016	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4429703	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530599	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4560374	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575963	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4621399	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4694164	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4694600	0.83[EUR][1000 genomes]
rs4694608	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4694609	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4694613	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58395249	0.84[AMR][1000 genomes]
rs6446931	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6810745	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6818116	0.84[AMR][1000 genomes]
rs6832260	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6832557	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6850155	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs714825	0.80[AMR][1000 genomes]
rs7434765	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7660680	0.98[EUR][1000 genomes]
rs7668327	0.89[EUR][1000 genomes]
rs7682895	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7683385	0.80[AMR][1000 genomes]
rs962004	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs962005	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9784408	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9784582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9996318	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9999209	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:74300400-74307600	Weak transcription	Liver	Liver
3	chr4:74301400-74302400	Enhancers	Fetal Intestine Large	intestine
4	chr4:74301800-74304600	Active TSS	HepG2	liver
5	chr4:74302000-74303400	Weak transcription	Fetal Intestine Small	intestine

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