Variant report

Variant	rs13138734
Chromosome Location	chr4:74299599-74299600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:74299500-74299650	AG04450	lung:	n/a	n/a
2	CTCF	chr4:74299480-74299630	HPF	lung:	n/a	n/a
3	MYC	chr4:74299599-74299616	GM12878	blood:	n/a	n/a
4	CTCF	chr4:74299460-74299610	HEEpiC	esophagus:	n/a	n/a
5	CTCF	chr4:74299520-74299670	HRPEpiC	eye:	n/a	n/a
6	CTCF	chr4:74299520-74299670	HCFaa	heart:	n/a	n/a
7	CTCF	chr4:74299500-74299650	HPF	lung:	n/a	n/a

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002756	0.89[CEU][hapmap]
rs10002903	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020432	0.89[CEU][hapmap]
rs10022167	0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10022463	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10031441	0.89[CEU][hapmap]
rs12503222	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12504308	0.88[EUR][1000 genomes]
rs12506899	0.89[CEU][hapmap]
rs12510644	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12649712	0.86[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13104065	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13114289	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122972	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13125875	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13135376	0.84[AMR][1000 genomes]
rs13138260	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1475934	0.86[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16849341	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16849384	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051510	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2051512	0.85[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2070849	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2236766	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2236767	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2276937	0.93[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2298839	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs28532518	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28585480	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35545060	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756066	0.81[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3775485	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775486	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3796676	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796677	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796678	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4018	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4024	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4076	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4270557	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4345146	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4403016	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4429703	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4513532	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4530599	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4560374	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4575963	0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4621399	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4694164	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4694600	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4694608	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4694609	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694613	0.89[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56271167	0.81[AMR][1000 genomes]
rs58395249	0.88[AMR][1000 genomes]
rs6446931	0.89[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6810745	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6818116	0.88[AMR][1000 genomes]
rs6820167	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs6832260	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832557	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850155	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853164	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs714825	0.81[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes]
rs7434765	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7660680	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7668327	0.83[EUR][1000 genomes]
rs7682895	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7683385	0.84[AMR][1000 genomes]
rs7688274	0.80[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs962004	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs962005	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9784408	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9784582	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9996318	0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9999209	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74296600-74299800	Enhancers	Fetal Intestine Small	intestine
2	chr4:74298000-74299600	Enhancers	K562	blood
3	chr4:74298200-74299600	Enhancers	Gastric	stomach
4	chr4:74298200-74299600	Enhancers	Pancreas	Pancrea
5	chr4:74298200-74299600	Enhancers	Stomach Mucosa	stomach
6	chr4:74298600-74300400	Enhancers	Liver	Liver
7	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:74298800-74299600	Flanking Active TSS	HepG2	liver
9	chr4:74299200-74301400	Weak transcription	Fetal Intestine Large	intestine

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