Variant report

Variant	rs6853164
Chromosome Location	chr4:74151780-74151781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74124371..74126309-chr4:74150004..74152624,2	K562	blood:
2	chr4:74136992..74139816-chr4:74149704..74153083,3	K562	blood:
3	chr4:74147712..74150225-chr4:74150785..74152446,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALB-6	chr4:74151604-74152137	NONHSAT096838

Variant related genes	Relation type
ENSG00000250220	Chromatin interaction
ENSG00000132466	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002756	0.88[CEU][hapmap]
rs10002903	0.81[ASN][1000 genomes]
rs10020432	0.88[CEU][hapmap]
rs10022167	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10022463	0.84[ASN][1000 genomes]
rs10031441	0.88[CEU][hapmap]
rs12503222	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12506899	0.88[CEU][hapmap]
rs12510644	0.86[ASN][1000 genomes]
rs12649712	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs13104065	0.85[ASN][1000 genomes]
rs13114289	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13122972	0.81[ASN][1000 genomes]
rs13135376	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13136437	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138260	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13138734	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs1475934	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16849341	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16849384	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap]
rs2051510	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2051512	0.92[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2070849	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs2236766	0.82[ASN][1000 genomes]
rs2236767	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2276937	0.92[CEU][hapmap]
rs2298839	0.88[CEU][hapmap]
rs28585480	0.81[ASN][1000 genomes]
rs28718348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28796001	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28885986	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28891076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35545060	0.80[ASN][1000 genomes]
rs3756066	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3775485	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3775486	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3796676	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs4018	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap]
rs4024	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4076	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4270557	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4345146	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4403016	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs4429703	0.81[ASN][1000 genomes]
rs4513532	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4530599	0.81[ASN][1000 genomes]
rs4560374	0.83[ASN][1000 genomes]
rs4575963	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4621399	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4694164	0.85[ASN][1000 genomes]
rs4694598	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4694600	0.85[ASN][1000 genomes]
rs4694608	0.81[ASN][1000 genomes]
rs4694613	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs58395249	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6446931	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6810745	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6818116	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6820167	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829085	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6832260	0.83[ASN][1000 genomes]
rs6832557	0.84[ASN][1000 genomes]
rs6850155	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs714825	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7434765	0.81[ASN][1000 genomes]
rs7660680	0.91[CEU][hapmap]
rs7682895	0.86[ASN][1000 genomes]
rs7683385	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7688274	0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs962004	0.82[ASN][1000 genomes]
rs962005	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9784408	0.81[ASN][1000 genomes]
rs9784582	0.81[ASN][1000 genomes]
rs9995176	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9996318	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9999209	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6853164	ALB	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74126000-74153400	Weak transcription	HSMMtube	muscle
2	chr4:74126600-74152400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:74127200-74154800	Weak transcription	Left Ventricle	heart
5	chr4:74127400-74154000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:74143000-74158000	Weak transcription	Aorta	Aorta
7	chr4:74143200-74154000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:74144600-74154000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:74147200-74154200	Weak transcription	Brain Anterior Caudate	brain
10	chr4:74147600-74152800	Weak transcription	Esophagus	oesophagus
11	chr4:74147800-74157800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:74148200-74157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:74149400-74153600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:74149600-74152600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:74150200-74153200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:74150400-74159200	Weak transcription	Primary T cells from cord blood	blood
17	chr4:74151000-74152000	Enhancers	Liver	Liver
18	chr4:74151000-74152200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:74151400-74151800	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:74151400-74151800	Enhancers	NHEK	skin
21	chr4:74151400-74152000	Enhancers	HepG2	liver
22	chr4:74151600-74152000	Enhancers	Pancreas	Pancrea
23	chr4:74151600-74152000	Enhancers	HMEC	breast

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