Variant report

Variant	rs28796001
Chromosome Location	chr4:74157987-74157988
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12510644	0.81[ASN][1000 genomes]
rs13104065	0.80[ASN][1000 genomes]
rs13135376	0.80[EUR][1000 genomes]
rs13136437	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28718348	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28885986	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28891076	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4560374	0.80[ASN][1000 genomes]
rs4694164	0.80[ASN][1000 genomes]
rs4694598	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4694600	0.80[ASN][1000 genomes]
rs6820167	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6829085	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6853164	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs714825	0.80[EUR][1000 genomes]
rs7682895	0.81[ASN][1000 genomes]
rs7683385	0.80[EUR][1000 genomes]
rs9995176	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:74143000-74158000	Weak transcription	Aorta	Aorta
3	chr4:74150400-74159200	Weak transcription	Primary T cells from cord blood	blood
4	chr4:74152000-74158200	Weak transcription	Liver	Liver
5	chr4:74152200-74158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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