Variant report

Variant	rs28885986
Chromosome Location	chr4:74158475-74158476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10022463	0.81[ASN][1000 genomes]
rs12510644	0.83[ASN][1000 genomes]
rs13104065	0.82[ASN][1000 genomes]
rs13114289	0.80[ASN][1000 genomes]
rs13135376	0.82[EUR][1000 genomes]
rs13136437	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13138260	0.81[ASN][1000 genomes]
rs16849341	0.80[ASN][1000 genomes]
rs2051512	0.81[ASN][1000 genomes]
rs28718348	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28796001	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28891076	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3756066	0.81[ASN][1000 genomes]
rs3775485	0.81[ASN][1000 genomes]
rs3775486	0.81[ASN][1000 genomes]
rs4270557	0.81[ASN][1000 genomes]
rs4513532	0.80[ASN][1000 genomes]
rs4621399	0.80[ASN][1000 genomes]
rs4694164	0.82[ASN][1000 genomes]
rs4694598	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4694600	0.82[ASN][1000 genomes]
rs6818116	0.81[EUR][1000 genomes]
rs6820167	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6829085	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6832260	0.80[ASN][1000 genomes]
rs6832557	0.81[ASN][1000 genomes]
rs6853164	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs714825	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7682895	0.83[ASN][1000 genomes]
rs7683385	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9995176	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:74150400-74159200	Weak transcription	Primary T cells from cord blood	blood
3	chr4:74152200-74158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:74158000-74158800	ZNF genes & repeats	Aorta	Aorta
5	chr4:74158000-74160200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:74158200-74159000	ZNF genes & repeats	Liver	Liver
7	chr4:74158400-74159000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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