Variant report

Variant	rs9995176
Chromosome Location	chr4:74176984-74176985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74176660..74177830-chr4:74312110..74312752,4	MCF-7	breast:
2	chr4:74176975..74177579-chr4:74519143..74519649,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALB-1	chr4:74174810-74184383	NONHSAT096839

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10002756	0.88[CEU][hapmap]
rs10002903	0.84[ASN][1000 genomes]
rs10020432	0.88[CEU][hapmap]
rs10022167	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs10022463	0.86[ASN][1000 genomes]
rs10031441	0.88[CEU][hapmap]
rs12503222	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12506899	0.88[CEU][hapmap]
rs12510644	0.90[ASN][1000 genomes]
rs12649712	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13104065	0.88[ASN][1000 genomes]
rs13114289	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13122972	0.84[ASN][1000 genomes]
rs13125875	0.81[ASN][1000 genomes]
rs13135376	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13136437	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13138260	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13138734	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs1475934	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16849341	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16849384	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap]
rs2051510	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2051512	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2070849	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs2236766	0.85[ASN][1000 genomes]
rs2236767	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2276937	0.85[CEU][hapmap]
rs2298839	0.80[CEU][hapmap]
rs28585480	0.83[ASN][1000 genomes]
rs28718348	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28796001	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28885986	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28891076	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35545060	0.83[ASN][1000 genomes]
rs3756066	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3775485	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3775486	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3796676	0.87[CEU][hapmap];0.90[CHB][hapmap]
rs4018	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap]
rs4024	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap]
rs4076	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4270557	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4345146	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4403016	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs4429703	0.84[ASN][1000 genomes]
rs4513532	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4530599	0.84[ASN][1000 genomes]
rs4560374	0.85[ASN][1000 genomes]
rs4575963	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4621399	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4694164	0.88[ASN][1000 genomes]
rs4694598	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4694600	0.89[ASN][1000 genomes]
rs4694608	0.84[ASN][1000 genomes]
rs4694613	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs56271167	0.81[EUR][1000 genomes]
rs58395249	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6446931	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6810745	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6818116	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6820167	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6829085	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6832260	0.86[ASN][1000 genomes]
rs6832557	0.86[ASN][1000 genomes]
rs6850155	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs6853164	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714825	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7434765	0.84[ASN][1000 genomes]
rs7660680	0.83[CEU][hapmap]
rs7682895	0.88[ASN][1000 genomes]
rs7683385	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7688274	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs962004	0.85[ASN][1000 genomes]
rs962005	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9784408	0.84[ASN][1000 genomes]
rs9784582	0.84[ASN][1000 genomes]
rs9996318	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs9999209	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9995176	ALB	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74174000-74178000	Enhancers	NHLF	lung
2	chr4:74174600-74177000	Weak transcription	Liver	Liver
3	chr4:74175600-74177000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:74175800-74177000	Weak transcription	Osteobl	bone
5	chr4:74176000-74177600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:74176400-74178800	Enhancers	Dnd41	blood
7	chr4:74176800-74177200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:74176800-74177400	Enhancers	NHDF-Ad	bronchial
9	chr4:74176800-74177600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:74176800-74178000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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