Variant report

Variant	rs13136437
Chromosome Location	chr4:74158962-74158963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10002756	0.88[CEU][hapmap]
rs10002903	0.83[ASN][1000 genomes]
rs10020432	0.88[CEU][hapmap]
rs10022167	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10022463	0.85[ASN][1000 genomes]
rs10031441	0.88[CEU][hapmap]
rs12503222	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12506899	0.88[CEU][hapmap]
rs12510644	0.87[ASN][1000 genomes]
rs12649712	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13104065	0.86[ASN][1000 genomes]
rs13114289	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122972	0.83[ASN][1000 genomes]
rs13125875	0.80[ASN][1000 genomes]
rs13135376	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13138260	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13138734	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs1475934	0.93[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16849341	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16849384	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs2051510	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051512	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2070849	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs2236766	0.83[ASN][1000 genomes]
rs2236767	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2276937	0.85[CEU][hapmap]
rs2298839	0.80[CEU][hapmap]
rs28585480	0.82[ASN][1000 genomes]
rs28718348	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28796001	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28885986	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28891076	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545060	0.81[ASN][1000 genomes]
rs3756066	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775485	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3775486	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3796676	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs4018	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs4024	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs4076	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4270557	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4345146	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4403016	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs4429703	0.83[ASN][1000 genomes]
rs4513532	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4530599	0.83[ASN][1000 genomes]
rs4560374	0.84[ASN][1000 genomes]
rs4575963	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4621399	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4694164	0.86[ASN][1000 genomes]
rs4694598	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4694600	0.86[ASN][1000 genomes]
rs4694608	0.83[ASN][1000 genomes]
rs4694613	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs58395249	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6446931	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6810745	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6818116	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6820167	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6829085	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6832260	0.85[ASN][1000 genomes]
rs6832557	0.85[ASN][1000 genomes]
rs6850155	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs6853164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs714825	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7434765	0.83[ASN][1000 genomes]
rs7660680	0.84[CEU][hapmap]
rs7682895	0.87[ASN][1000 genomes]
rs7683385	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7688274	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs962004	0.83[ASN][1000 genomes]
rs962005	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9784408	0.83[ASN][1000 genomes]
rs9784582	0.83[ASN][1000 genomes]
rs9995176	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996318	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9999209	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74150400-74159200	Weak transcription	Primary T cells from cord blood	blood
2	chr4:74158000-74160200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:74158200-74159000	ZNF genes & repeats	Liver	Liver
4	chr4:74158400-74159000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:74158600-74159000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr4:74158600-74159200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr4:74158600-74159400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:74158800-74159000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:74158800-74160200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr4:74158800-74160800	Weak transcription	Aorta	Aorta

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