Variant report

Variant	rs12510553
Chromosome Location	chr4:74288714-74288715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10002756	0.90[CHB][hapmap]
rs10008400	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020432	0.89[CHB][hapmap]
rs10030080	0.82[EUR][1000 genomes]
rs10031441	0.94[CHB][hapmap]
rs10032380	0.82[EUR][1000 genomes]
rs12506899	0.90[CHB][hapmap]
rs13106620	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1475934	0.81[JPT][hapmap]
rs16849267	0.85[EUR][1000 genomes]
rs16849341	0.81[JPT][hapmap]
rs16849364	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16849366	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2298839	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs28678620	0.91[AFR][1000 genomes]
rs28733441	0.91[AFR][1000 genomes]
rs28821191	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34681098	0.85[EUR][1000 genomes]
rs34787727	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34898621	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35215741	0.81[EUR][1000 genomes]
rs3822100	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs4364229	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4446279	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4591567	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4640638	0.81[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs667	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6829532	0.84[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6829551	0.83[JPT][hapmap];0.84[YRI][hapmap]
rs6834059	0.81[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6836787	0.81[EUR][1000 genomes]
rs6845493	0.81[EUR][1000 genomes]
rs7660680	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
2	chr4:74287000-74291200	Weak transcription	HepG2	liver
3	chr4:74287400-74295400	Weak transcription	Liver	Liver

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