Variant report

Variant	rs28678620
Chromosome Location	chr4:74295521-74295522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12510553	0.91[AFR][1000 genomes]
rs13106620	0.85[AFR][1000 genomes]
rs16849366	0.91[AFR][1000 genomes]
rs28733441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28821191	0.89[AFR][1000 genomes]
rs34787727	0.89[AFR][1000 genomes]
rs4364229	0.91[AFR][1000 genomes]
rs4446279	0.82[AFR][1000 genomes]
rs4591567	0.81[AFR][1000 genomes]
rs4640638	0.82[AFR][1000 genomes]
rs667	0.91[AFR][1000 genomes]
rs6829532	0.91[AFR][1000 genomes]
rs6834059	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv980527	chr4:74289660-74297406	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
2	chr4:74291200-74297000	Enhancers	HepG2	liver
3	chr4:74292800-74296600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:74293200-74296600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:74295200-74298200	Weak transcription	Fetal Lung	lung
6	chr4:74295400-74298000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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