Variant report

Variant	rs34745071
Chromosome Location	chr3:99966123-99966124
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13074029	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13084945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13096852	0.84[EUR][1000 genomes]
rs13098066	0.84[EUR][1000 genomes]
rs71620020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99956200-99966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99959800-99972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:99963400-99966200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:99964600-99978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:99964800-99979000	Weak transcription	Aorta	Aorta
6	chr3:99965000-99966200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:99965000-99972800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:99965200-99967800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:99965200-99972600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:99965200-99978800	Weak transcription	NH-A	brain
11	chr3:99965400-99966200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:99965600-99978800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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