Variant report

Variant	rs13096852
Chromosome Location	chr3:99909642-99909643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13074029	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13084945	0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs13094890	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13098066	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34745071	0.84[EUR][1000 genomes]
rs35074168	0.84[EUR][1000 genomes]
rs3796131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62285476	0.86[EUR][1000 genomes]
rs62285480	0.88[EUR][1000 genomes]
rs71313590	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71620020	0.86[EUR][1000 genomes]
rs7647466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99899000-99911000	Weak transcription	Aorta	Aorta
2	chr3:99905600-99910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99905600-99910400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:99905800-99910600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:99908800-99910000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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