Variant report

Variant	rs7647466
Chromosome Location	chr3:99776445-99776446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99774401..99777236-chr3:99780310..99781935,2	MCF-7	breast:
2	chr3:99773385..99774935-chr3:99776387..99778505,2	K562	blood:
3	chr3:99768194..99771099-chr3:99774948..99777546,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13063594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13074029	0.83[EUR][1000 genomes]
rs13082013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13094890	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13095282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13096116	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs13096852	0.82[EUR][1000 genomes]
rs13097830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13098066	0.82[EUR][1000 genomes]
rs13100490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs34081874	0.90[ASN][1000 genomes]
rs35074168	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35669249	0.91[EUR][1000 genomes]
rs3796131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62285469	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285476	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285480	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6791889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap]
rs71313590	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591148	chr3:99774720-99905803	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99713600-99787800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99762000-99778200	Weak transcription	Ovary	ovary
3	chr3:99767000-99777000	Weak transcription	Aorta	Aorta
4	chr3:99767400-99779600	Weak transcription	Left Ventricle	heart
5	chr3:99767600-99779400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:99767600-99801000	Weak transcription	HSMM	muscle
7	chr3:99767800-99777000	Weak transcription	HMEC	breast
8	chr3:99768200-99780400	Weak transcription	GM12878-XiMat	blood
9	chr3:99768400-99788000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:99770800-99787600	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:99771600-99778400	Weak transcription	K562	blood
12	chr3:99772400-99777400	Weak transcription	HSMMtube	muscle
13	chr3:99773200-99776600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:99773400-99776600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:99774000-99794800	Weak transcription	Stomach Mucosa	stomach
16	chr3:99775000-99785800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:99775200-99777000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:99775400-99776800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99775600-99776800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:99775600-99778600	Weak transcription	Psoas Muscle	Psoas
21	chr3:99776000-99777800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99776200-99777200	Enhancers	Adipose Nuclei	Adipose
23	chr3:99776200-99777600	Enhancers	HepG2	liver
24	chr3:99776400-99776600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:99776400-99777000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:99776400-99777400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:99776400-99777600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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