Variant report

Variant	rs34753286
Chromosome Location	chr16:71608408-71608409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10500562	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12444890	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12447033	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12919417	0.81[EUR][1000 genomes]
rs12922775	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12923781	0.84[AMR][1000 genomes]
rs12927768	0.82[AMR][1000 genomes]
rs12931191	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17282500	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17347255	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34181942	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34381861	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71403859	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7203606	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8063455	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34753286	RP11-432I5.1	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71602400-71615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:71607400-71612200	Enhancers	HepG2	liver
3	chr16:71608200-71611000	Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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