Variant report
| Variant | rs34181942 |
|---|---|
| Chromosome Location | chr16:71585284-71585285 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10500562 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12444890 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12447033 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12919417 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12922775 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12923781 | 0.81[AMR][1000 genomes] |
| rs12927006 | 0.80[AMR][1000 genomes] |
| rs12927456 | 0.82[AMR][1000 genomes] |
| rs12931191 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17280181 | 0.86[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs17282500 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17345863 | 0.86[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs17347255 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34381861 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34753286 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34849731 | 0.84[AMR][1000 genomes] |
| rs35394108 | 0.82[AMR][1000 genomes] |
| rs35837657 | 0.81[AFR][1000 genomes] |
| rs71403859 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7203606 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8057616 | 0.81[AFR][1000 genomes] |
| rs8063455 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8064179 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs34181942 | RP11-432I5.1 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71583200-71587000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
