Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71517067..71518661-chr16:71548978..71551457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157429	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10500562	0.91[CEU][hapmap]
rs12447033	0.91[CEU][hapmap];0.80[AMR][1000 genomes]
rs12708914	0.87[EUR][1000 genomes]
rs12919417	0.85[AFR][1000 genomes]
rs12922775	0.91[CEU][hapmap];0.80[AMR][1000 genomes]
rs12924650	0.83[CEU][hapmap]
rs12927456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12927768	0.82[CEU][hapmap]
rs12931191	0.91[CEU][hapmap]
rs17280181	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17345863	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17347255	0.91[CEU][hapmap];0.80[AMR][1000 genomes]
rs17354693	0.83[CEU][hapmap]
rs17355804	0.83[CEU][hapmap]
rs17356316	0.83[CEU][hapmap]
rs34015581	0.97[EUR][1000 genomes]
rs34181942	0.80[AMR][1000 genomes]
rs34380814	0.92[EUR][1000 genomes]
rs34766979	0.87[EUR][1000 genomes]
rs34849731	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35394108	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35837657	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35981926	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36122765	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71403847	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71403849	0.92[EUR][1000 genomes]
rs7195767	0.87[EUR][1000 genomes]
rs7203606	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs8051974	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8053720	0.90[CEU][hapmap]
rs8063455	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71549200-71558400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr16:71549800-71550400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:71549800-71551200	Enhancers	Pancreas	Pancrea

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