Variant report

Variant	rs36122765
Chromosome Location	chr16:71504183-71504184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71490795..71493045-chr16:71503672..71506458,2	K562	blood:
2	chr16:71504129..71506148-chr16:71516935..71519923,2	MCF-7	breast:
3	chr16:71492607..71498322-chr16:71498324..71506196,11	MCF-7	breast:
4	chr16:71501777..71504789-chr16:71515652..71517966,3	MCF-7	breast:
5	chr16:71493295..71494894-chr16:71504109..71506023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157429	Chromatin interaction
ENSG00000247324	Chromatin interaction
ENSG00000167377	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12708914	0.91[EUR][1000 genomes]
rs12927006	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12927456	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17280181	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17345863	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34015581	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34380814	0.96[EUR][1000 genomes]
rs34766979	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34849731	0.90[AMR][1000 genomes]
rs35394108	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35837657	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35981926	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71403847	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71403849	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7195767	0.91[EUR][1000 genomes]
rs7203606	0.82[AMR][1000 genomes]
rs8051974	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71496400-71509400	Weak transcription	Small Intestine	intestine
2	chr16:71496600-71507600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:71496600-71508400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr16:71496600-71508400	Weak transcription	Placenta	Placenta
5	chr16:71496600-71509200	Weak transcription	Fetal Intestine Large	intestine
6	chr16:71496600-71509400	Weak transcription	Colonic Mucosa	Colon
7	chr16:71496600-71509400	Weak transcription	Esophagus	oesophagus
8	chr16:71496600-71509400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:71496600-71511400	Weak transcription	Pancreas	Pancrea
10	chr16:71496800-71505000	Weak transcription	Liver	Liver
11	chr16:71496800-71507600	Weak transcription	Ovary	ovary
12	chr16:71496800-71507800	Weak transcription	Fetal Muscle Leg	muscle
13	chr16:71496800-71507800	Weak transcription	Left Ventricle	heart
14	chr16:71496800-71507800	Weak transcription	HSMM	muscle
15	chr16:71496800-71507800	Weak transcription	HSMMtube	muscle
16	chr16:71496800-71508400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr16:71496800-71508600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:71496800-71508600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr16:71496800-71508600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:71496800-71508800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr16:71496800-71508800	Weak transcription	Primary T cells from cord blood	blood
22	chr16:71496800-71508800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr16:71496800-71508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:71496800-71508800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:71496800-71509000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr16:71496800-71509200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr16:71496800-71509400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:71496800-71509400	Weak transcription	Psoas Muscle	Psoas
29	chr16:71496800-71512000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr16:71496800-71512200	Weak transcription	Fetal Intestine Small	intestine
31	chr16:71497000-71504200	Weak transcription	Brain Hippocampus Middle	brain
32	chr16:71497000-71504400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr16:71497000-71504400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr16:71497000-71504600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr16:71497000-71507800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr16:71497000-71507800	Weak transcription	NHLF	lung
37	chr16:71497000-71508000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr16:71497000-71508400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr16:71497000-71508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr16:71497000-71511800	Weak transcription	Brain Substantia Nigra	brain
41	chr16:71497000-71517400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr16:71497000-71517400	Weak transcription	Fetal Heart	heart
43	chr16:71497000-71517600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr16:71497200-71504600	Weak transcription	Fetal Brain Female	brain
45	chr16:71497200-71504800	Weak transcription	Aorta	Aorta
46	chr16:71497200-71504800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr16:71497200-71504800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr16:71497200-71504800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr16:71497200-71505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr16:71497200-71505000	Weak transcription	Brain Anterior Caudate	brain

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