Variant report
| Variant | rs71403847 |
|---|---|
| Chromosome Location | chr16:71468226-71468227 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71458616..71460570-chr16:71466818..71468399,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261348 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12708914 | 1.00[EUR][1000 genomes] |
| rs12927006 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12927456 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17280181 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17345863 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34015581 | 0.90[EUR][1000 genomes] |
| rs34380814 | 0.95[EUR][1000 genomes] |
| rs34766979 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35394108 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35837657 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35981926 | 0.82[EUR][1000 genomes] |
| rs36122765 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs56893224 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs71403849 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7195767 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8051974 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8053720 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
