Variant report

Variant	rs34849731
Chromosome Location	chr16:71578927-71578928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12447033	0.84[AMR][1000 genomes]
rs12919417	0.86[AMR][1000 genomes]
rs12922775	0.84[AMR][1000 genomes]
rs12927006	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12927456	0.92[AMR][1000 genomes]
rs17280181	0.92[AMR][1000 genomes]
rs17345863	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17347255	0.84[AMR][1000 genomes]
rs34181942	0.84[AMR][1000 genomes]
rs35394108	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36122765	0.90[AMR][1000 genomes]
rs7203606	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34849731	DHX38	cis	brain	BrainEAC

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71560600-71583400	Weak transcription	Pancreas	Pancrea
2	chr16:71561000-71582400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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