Variant report
| Variant | rs34760954 |
|---|---|
| Chromosome Location | chr1:91715085-91715086 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12408911 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12562039 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12562097 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12566911 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12567679 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12746588 | 0.81[ASN][1000 genomes] |
| rs12749858 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1610018 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1822057 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34600283 | 0.82[AMR][1000 genomes] |
| rs34744207 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34999283 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35081855 | 0.88[ASN][1000 genomes] |
| rs4658206 | 0.94[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58986615 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60685596 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs66715895 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs66730201 | 0.88[ASN][1000 genomes] |
| rs67955041 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs920469 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949516 | chr1:91644418-92109261 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:91711800-91716600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
