Variant report

Variant	rs35081855
Chromosome Location	chr1:91746918-91746919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:91745154..91747996-chr1:91866350..91867875,2	K562	blood:
2	chr1:91630603..91631513-chr1:91746786..91747465,2	K562	blood:
3	chr1:91746223..91748167-chr1:91868929..91871245,2	K562	blood:

Variant related genes	Relation type
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12408911	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12562039	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562097	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12564415	0.93[AMR][1000 genomes]
rs12566911	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12567679	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12567930	0.91[AMR][1000 genomes]
rs12729858	0.85[AMR][1000 genomes]
rs12746156	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12749858	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12757442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12759453	0.88[AMR][1000 genomes]
rs12760267	0.81[AMR][1000 genomes]
rs1610018	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1822057	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1974253	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2060997	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2099749	0.85[AMR][1000 genomes]
rs28395174	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs34105527	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34507721	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34600283	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34744207	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34760954	0.88[ASN][1000 genomes]
rs34809593	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs34840774	0.98[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34999283	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35462750	0.85[AMR][1000 genomes]
rs4248874	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4658206	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658210	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4658215	0.82[AMR][1000 genomes]
rs66715895	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs66730201	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67955041	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs920469	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91719600-91748400	Weak transcription	Ovary	ovary
2	chr1:91719800-91748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:91738200-91748400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:91744400-91748400	Weak transcription	K562	blood

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