Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12408911	0.84[EUR][1000 genomes]
rs12562039	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12562097	0.85[EUR][1000 genomes]
rs12564415	0.91[AMR][1000 genomes]
rs12566911	0.85[EUR][1000 genomes]
rs12567679	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12567930	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12729858	0.83[AMR][1000 genomes]
rs12746156	0.94[AMR][1000 genomes]
rs12749858	0.81[AMR][1000 genomes]
rs12757442	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12759453	0.87[AMR][1000 genomes]
rs1610018	0.81[AMR][1000 genomes]
rs17131418	0.80[AMR][1000 genomes]
rs1822057	0.81[AMR][1000 genomes]
rs1974253	0.89[AMR][1000 genomes]
rs2060997	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2099749	0.83[AMR][1000 genomes]
rs28395174	0.89[AMR][1000 genomes]
rs34105527	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34507721	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34600283	0.90[AMR][1000 genomes]
rs34744207	0.86[EUR][1000 genomes]
rs34809593	0.92[AMR][1000 genomes]
rs34840774	0.92[AMR][1000 genomes]
rs34999283	0.81[AMR][1000 genomes]
rs35081855	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35462750	0.87[AMR][1000 genomes]
rs4658206	0.81[AMR][1000 genomes]
rs4658210	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4658215	0.80[AMR][1000 genomes]
rs66715895	0.81[AMR][1000 genomes]
rs66730201	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67955041	0.81[AMR][1000 genomes]
rs920469	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary
2	chr1:91751600-91752600	Active TSS	A549	lung
3	chr1:91752400-91762200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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