Variant report

Variant	rs34762201
Chromosome Location	chr6:45291185-45291186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45290102..45292496-chr6:45343857..45345735,2	K562	blood:

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13197348	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204295	0.90[EUR][1000 genomes]
rs13208381	1.00[AMR][1000 genomes]
rs13209909	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13220256	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35147379	0.90[EUR][1000 genomes]
rs35454412	1.00[EUR][1000 genomes]
rs35946050	0.90[EUR][1000 genomes]
rs36011458	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36043738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36095973	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71566529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45285600-45295800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:45289800-45294600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:45290200-45292200	Active TSS	Osteobl	bone
4	chr6:45290200-45292600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:45290400-45291200	Enhancers	Dnd41	blood
6	chr6:45290400-45291400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:45290400-45291600	Enhancers	Fetal Heart	heart
8	chr6:45290400-45291800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:45290400-45291800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:45290400-45292000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:45290400-45292000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:45290400-45292600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:45290400-45292600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:45290600-45291400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr6:45290600-45291600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:45290600-45292400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:45290800-45291200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:45290800-45291200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:45290800-45292600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:45290800-45293800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:45290800-45295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:45291000-45291400	Enhancers	Primary T cells from cord blood	blood
23	chr6:45291000-45292000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:45291000-45292600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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