Variant report

Variant	rs71566529
Chromosome Location	chr6:45308035-45308036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13197348	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204295	0.90[EUR][1000 genomes]
rs13208381	1.00[AMR][1000 genomes]
rs13209909	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13220256	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34762201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35147379	0.90[EUR][1000 genomes]
rs35454412	1.00[EUR][1000 genomes]
rs36011458	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36043738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36095973	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45296200-45322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:45298400-45320800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:45299200-45333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:45299400-45343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:45301600-45329600	Weak transcription	Dnd41	blood
6	chr6:45304000-45324400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:45304200-45317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45305000-45334000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:45305400-45310600	Weak transcription	Osteobl	bone
10	chr6:45305400-45339800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:45306600-45309800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links