Variant report

Variant	rs34766166
Chromosome Location	chr2:114779525-114779526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10182662	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197843	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005565	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017953	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383339	0.92[EUR][1000 genomes]
rs67750410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416581	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114768000-114779600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:114778400-114786400	Weak transcription	Pancreas	Pancrea
3	chr2:114779000-114779800	Enhancers	NH-A	brain
4	chr2:114779200-114780600	Enhancers	HepG2	liver
5	chr2:114779400-114781400	Enhancers	HMEC	breast
6	chr2:114779400-114782000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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