Variant report

Variant	rs71416581
Chromosome Location	chr2:114791894-114791895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10182662	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197843	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005565	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017953	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34766166	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383339	0.92[EUR][1000 genomes]
rs67750410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114789200-114792200	Enhancers	Fetal Muscle Leg	muscle
2	chr2:114789800-114793000	Weak transcription	Aorta	Aorta
3	chr2:114790200-114792000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr2:114790400-114792000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:114790600-114792000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:114790800-114792800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:114790800-114793000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:114790800-114798400	Weak transcription	Fetal Brain Male	brain
9	chr2:114791000-114792000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:114791600-114792800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:114791800-114792800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:114791800-114792800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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