Variant report

Variant	rs34780673
Chromosome Location	chr11:9709153-9709154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9708443..9711288-chr11:9711524..9713112,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11042471	0.84[EUR][1000 genomes]
rs11042472	0.84[EUR][1000 genomes]
rs11042473	0.84[EUR][1000 genomes]
rs11042474	0.84[EUR][1000 genomes]
rs11042475	0.84[EUR][1000 genomes]
rs11042477	0.84[EUR][1000 genomes]
rs11042478	0.84[EUR][1000 genomes]
rs12275468	0.84[EUR][1000 genomes]
rs12291809	0.88[ASN][1000 genomes]
rs12295129	0.84[EUR][1000 genomes]
rs12576997	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577241	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088293	0.84[EUR][1000 genomes]
rs2101902	0.84[EUR][1000 genomes]
rs2572936	0.84[EUR][1000 genomes]
rs2572937	0.84[EUR][1000 genomes]
rs2572938	0.84[EUR][1000 genomes]
rs2572939	0.84[EUR][1000 genomes]
rs2572941	0.84[EUR][1000 genomes]
rs2572947	0.89[ASN][1000 genomes]
rs2572948	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572949	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572952	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2645014	0.92[ASN][1000 genomes]
rs2645015	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645016	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645018	0.84[EUR][1000 genomes]
rs2645019	0.84[EUR][1000 genomes]
rs2645021	0.84[EUR][1000 genomes]
rs2645022	0.84[EUR][1000 genomes]
rs2645023	0.84[EUR][1000 genomes]
rs360044	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs360045	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs360046	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs360048	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs360050	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs360052	0.96[ASN][1000 genomes]
rs360053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57239484	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67598578	0.84[EUR][1000 genomes]
rs73408298	0.84[EUR][1000 genomes]
rs73408300	0.88[EUR][1000 genomes]
rs73410140	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9686600-9709600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:9686600-9711200	Weak transcription	Esophagus	oesophagus
3	chr11:9686800-9710800	Weak transcription	Aorta	Aorta
4	chr11:9686800-9716400	Weak transcription	Ovary	ovary
5	chr11:9687200-9709400	Weak transcription	HSMMtube	muscle
6	chr11:9687200-9710200	Weak transcription	Hela-S3	cervix
7	chr11:9687400-9709200	Weak transcription	HMEC	breast
8	chr11:9687400-9710800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:9688200-9710000	Weak transcription	A549	lung
10	chr11:9693200-9710000	Weak transcription	Fetal Thymus	thymus
11	chr11:9694800-9709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:9695000-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:9695000-9709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:9695000-9709400	Weak transcription	NHLF	lung
15	chr11:9695200-9709800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:9695400-9709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:9696200-9709600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:9697000-9709800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:9697600-9709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:9697800-9709800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:9698000-9709200	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:9699400-9709200	Weak transcription	NHEK	skin
23	chr11:9699800-9709200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:9700000-9709600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:9700400-9709200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:9700600-9710000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:9701000-9709400	Weak transcription	Psoas Muscle	Psoas
28	chr11:9701000-9712800	Weak transcription	Small Intestine	intestine
29	chr11:9702600-9709400	Weak transcription	Fetal Stomach	stomach
30	chr11:9702800-9709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:9702800-9709800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:9702800-9709800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:9702800-9711000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:9702800-9711200	Weak transcription	Lung	lung
35	chr11:9703000-9709400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:9703200-9710800	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:9703400-9710800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:9703600-9709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:9703600-9711000	Weak transcription	Fetal Intestine Large	intestine
40	chr11:9703800-9709200	Weak transcription	Stomach Mucosa	stomach
41	chr11:9703800-9709600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:9703800-9709800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr11:9703800-9709800	Weak transcription	Gastric	stomach
44	chr11:9703800-9709800	Weak transcription	Right Atrium	heart
45	chr11:9703800-9710000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:9703800-9710000	Weak transcription	Spleen	Spleen
47	chr11:9703800-9710200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:9703800-9710800	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr11:9703800-9714400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:9704000-9709200	Weak transcription	Rectal Smooth Muscle	rectum

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