Variant report

Variant	rs34786833
Chromosome Location	chr15:75631223-75631224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75630334..75631987-chr15:75656015..75658534,2	MCF-7	breast:
2	chr15:75630795..75633486-chr15:75658867..75660629,2	K562	blood:
3	chr15:75628015..75635137-chr15:75659177..75662618,8	MCF-7	breast:
4	chr15:75628778..75631510-chr15:75648708..75650958,2	MCF-7	breast:
5	chr15:75630305..75632330-chr15:75638172..75640070,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260274	Chromatin interaction
ENSG00000140398	Chromatin interaction
ENSG00000140400	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35276980	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv1035829	chr15:75504534-75692417	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv977736	chr15:75509295-75632679	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
7	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75629200-75631600	Weak transcription	Ovary	ovary
2	chr15:75629200-75636200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:75629200-75638800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:75629200-75639000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:75629200-75639000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:75629200-75639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:75629200-75639200	Weak transcription	Aorta	Aorta
8	chr15:75629200-75639200	Weak transcription	Small Intestine	intestine
9	chr15:75629400-75631600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:75629400-75631600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:75629400-75631600	Weak transcription	HSMMtube	muscle
12	chr15:75629400-75631800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:75629400-75631800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:75629400-75631800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:75629400-75631800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:75629400-75631800	Weak transcription	HMEC	breast
17	chr15:75629400-75632000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:75629400-75632000	Weak transcription	Primary T cells from cord blood	blood
19	chr15:75629400-75632000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:75629400-75632200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr15:75629400-75632400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:75629400-75634800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:75629400-75635000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:75629400-75636200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:75629400-75637600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:75629400-75638400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:75629400-75638800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:75629400-75639000	Weak transcription	Brain Angular Gyrus	brain
29	chr15:75629400-75639000	Weak transcription	Colonic Mucosa	Colon
30	chr15:75629400-75639000	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:75629400-75639000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:75629400-75639200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:75629400-75639200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:75629400-75639200	Weak transcription	NH-A	brain
35	chr15:75629400-75639400	Weak transcription	HSMM	muscle
36	chr15:75629400-75639400	Weak transcription	NHDF-Ad	bronchial
37	chr15:75629600-75631400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:75629600-75631600	Weak transcription	Liver	Liver
39	chr15:75629600-75631600	Weak transcription	A549	lung
40	chr15:75629600-75632000	Weak transcription	Left Ventricle	heart
41	chr15:75629600-75632200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:75629600-75633400	Weak transcription	K562	blood
43	chr15:75629600-75638600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:75629600-75639000	Weak transcription	GM12878-XiMat	blood
45	chr15:75629600-75639000	Weak transcription	HepG2	liver
46	chr15:75629600-75639000	Weak transcription	HUVEC	blood vessel
47	chr15:75629600-75639600	Weak transcription	Hela-S3	cervix
48	chr15:75630200-75631400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:75630200-75632400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:75630200-75633600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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