Variant report

Variant	rs35276980
Chromosome Location	chr15:75891723-75891724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75887095..75893245-chr15:75929965..75934746,7	MCF-7	breast:
2	chr15:75870299..75873380-chr15:75889337..75893245,3	K562	blood:
3	chr15:75891451..75893125-chr17:57922215..57923887,2	MCF-7	breast:
4	chr15:75890760..75892416-chr15:75938936..75940652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177971	Chromatin interaction
ENSG00000169410	Chromatin interaction
ENSG00000173548	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11856606	1.00[MKK][hapmap]
rs34786833	1.00[AFR][1000 genomes]
rs61052540	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75872400-75892000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:75872400-75898600	Weak transcription	Small Intestine	intestine
3	chr15:75876800-75899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:75877600-75901800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:75880400-75912400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:75882200-75910400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:75882800-75911400	Strong transcription	Fetal Muscle Leg	muscle
8	chr15:75883400-75911800	Strong transcription	Fetal Stomach	stomach
9	chr15:75883600-75901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:75883800-75903600	Strong transcription	Stomach Smooth Muscle	stomach
11	chr15:75883800-75911600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:75883800-75911800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:75884000-75893600	Strong transcription	Spleen	Spleen
14	chr15:75884200-75893800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:75884200-75894400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:75884800-75898600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:75886000-75893600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:75886000-75895200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:75886000-75895600	Strong transcription	Fetal Brain Female	brain
20	chr15:75886000-75896400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:75886000-75898000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:75886000-75898200	Strong transcription	Fetal Thymus	thymus
23	chr15:75886000-75912400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:75886200-75893800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr15:75886200-75903200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:75886400-75893400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:75886400-75905400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:75886600-75894400	Strong transcription	Primary B cells from cord blood	blood
29	chr15:75886600-75894400	Strong transcription	HSMM	muscle
30	chr15:75886600-75895600	Strong transcription	Thymus	Thymus
31	chr15:75886600-75897800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:75886600-75903400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:75886800-75893400	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:75886800-75893600	Strong transcription	Fetal Lung	lung
35	chr15:75886800-75893600	Strong transcription	A549	lung
36	chr15:75886800-75893800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:75886800-75893800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:75886800-75894200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:75886800-75894400	Strong transcription	Osteobl	bone
40	chr15:75886800-75895400	Strong transcription	Ovary	ovary
41	chr15:75887600-75893800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:75887600-75893800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:75887600-75894000	Strong transcription	Fetal Intestine Large	intestine
44	chr15:75887600-75912400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:75887800-75893600	Strong transcription	GM12878-XiMat	blood
46	chr15:75887800-75894400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:75887800-75895200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr15:75887800-75895800	Strong transcription	Lung	lung
49	chr15:75887800-75898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:75888000-75891800	Strong transcription	HMEC	breast

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