Variant report

Variant	rs34791149
Chromosome Location	chr7:116798713-116798714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116795020..116797785-chr7:116798124..116799713,2	MCF-7	breast:
2	chr7:116787052..116789329-chr7:116797012..116799640,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13227862	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13246825	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34656305	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55912105	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56680066	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57745328	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60877331	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71564582	0.83[EUR][1000 genomes]
rs73211920	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73211938	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73211939	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73211943	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7806551	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116776400-116830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:116779600-116811200	Weak transcription	Fetal Brain Female	brain
3	chr7:116783400-116811000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:116785200-116856600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:116787200-116830200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:116787400-116834000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:116791400-116799600	Enhancers	Fetal Heart	heart
8	chr7:116793200-116811400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:116793400-116830600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:116793800-116799000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:116793800-116811200	Weak transcription	HepG2	liver
12	chr7:116794400-116799200	Enhancers	HSMMtube	muscle
13	chr7:116795400-116811000	Weak transcription	GM12878-XiMat	blood
14	chr7:116795400-116812200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:116795600-116798800	Enhancers	NHDF-Ad	bronchial
16	chr7:116795600-116811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:116795600-116814600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:116795600-116830200	Weak transcription	Fetal Intestine Small	intestine
19	chr7:116795800-116799000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:116795800-116799800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:116796000-116811200	Weak transcription	Fetal Intestine Large	intestine
22	chr7:116796600-116799600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:116796600-116799800	Enhancers	Osteobl	bone
24	chr7:116796800-116798800	Enhancers	Brain Substantia Nigra	brain
25	chr7:116796800-116799600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:116796800-116800600	Enhancers	Fetal Lung	lung
27	chr7:116796800-116829400	Weak transcription	Fetal Brain Male	brain
28	chr7:116797200-116798800	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:116797200-116798800	Enhancers	HUVEC	blood vessel
30	chr7:116797200-116798800	Enhancers	NHLF	lung
31	chr7:116797200-116799000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr7:116797200-116799200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr7:116797400-116798800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr7:116797400-116798800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:116797400-116799200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr7:116797600-116799000	Enhancers	Brain Anterior Caudate	brain
37	chr7:116797600-116799600	Enhancers	Colon Smooth Muscle	Colon
38	chr7:116797800-116799800	Enhancers	Rectal Smooth Muscle	rectum
39	chr7:116797800-116804200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:116798000-116798800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:116798000-116798800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr7:116798000-116804800	Weak transcription	Right Atrium	heart
43	chr7:116798000-116805000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:116798000-116811000	Weak transcription	Brain Germinal Matrix	brain
45	chr7:116798000-116811000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:116798000-116811000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:116798000-116811200	Weak transcription	Lung	lung
48	chr7:116798000-116811200	Weak transcription	Ovary	ovary
49	chr7:116798000-116811200	Weak transcription	K562	blood
50	chr7:116798000-116829800	Weak transcription	Gastric	stomach

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