Variant report

Variant	rs7806551
Chromosome Location	chr7:116814234-116814235
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116812237..116814863-chr7:116821919..116824062,2	K562	blood:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10487359	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13227862	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13229745	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13246825	0.82[EUR][1000 genomes]
rs193562	0.82[EUR][1000 genomes]
rs34656305	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34791149	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38874	0.82[EUR][1000 genomes]
rs38875	0.83[EUR][1000 genomes]
rs38879	0.82[EUR][1000 genomes]
rs55912105	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56680066	0.84[EUR][1000 genomes]
rs60877331	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6976661	0.81[EUR][1000 genomes]
rs71564582	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73211920	0.82[EUR][1000 genomes]
rs73211938	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73211939	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73211943	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116776400-116830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:116785200-116856600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:116787200-116830200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:116787400-116834000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:116793400-116830600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:116795600-116814600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:116795600-116830200	Weak transcription	Fetal Intestine Small	intestine
8	chr7:116796800-116829400	Weak transcription	Fetal Brain Male	brain
9	chr7:116798000-116829800	Weak transcription	Gastric	stomach
10	chr7:116798000-116850000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:116798200-116866600	Weak transcription	HMEC	breast
12	chr7:116798400-116849800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:116798600-116830000	Weak transcription	Brain Angular Gyrus	brain
14	chr7:116800200-116830000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:116802400-116816400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:116805200-116816000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:116805200-116830000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:116805200-116850000	Weak transcription	Psoas Muscle	Psoas
19	chr7:116805400-116826200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:116806600-116820600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:116807600-116857800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:116808400-116815000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:116808400-116871800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:116809400-116814800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:116809800-116829600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:116810200-116829400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr7:116810200-116830200	Weak transcription	Spleen	Spleen
28	chr7:116810200-116832400	Weak transcription	A549	lung
29	chr7:116810200-116850000	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:116810400-116815000	Weak transcription	Small Intestine	intestine
31	chr7:116810400-116826200	Weak transcription	NH-A	brain
32	chr7:116811000-116815600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:116811000-116817400	Strong transcription	Liver	Liver
34	chr7:116811000-116817600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:116811000-116817600	Strong transcription	GM12878-XiMat	blood
36	chr7:116811200-116814800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:116811200-116815000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:116811200-116815200	Strong transcription	Fetal Intestine Large	intestine
39	chr7:116811200-116815800	Strong transcription	HSMMtube	muscle
40	chr7:116811200-116818000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:116811400-116814800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:116811400-116816400	Strong transcription	Left Ventricle	heart
43	chr7:116811400-116829600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:116811400-116830200	Weak transcription	Right Ventricle	heart
45	chr7:116811600-116818200	Weak transcription	HUVEC	blood vessel
46	chr7:116811600-116829600	Weak transcription	Ovary	ovary
47	chr7:116811600-116838400	Weak transcription	Pancreas	Pancrea
48	chr7:116811800-116828200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:116811800-116830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:116811800-116833200	Weak transcription	NHDF-Ad	bronchial

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