The 2.0 version of rSNPBase

Variant report

Variant rs38879
Chromosome Location chr7:116825848-116825849
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116776400-116830200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr7:116785200-116856600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr7:116787200-116830200 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr7:116787400-116834000 Weak transcription Primary hematopoietic stem cells blood
5 chr7:116793400-116830600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr7:116795600-116830200 Weak transcription Fetal Intestine Small intestine
7 chr7:116796800-116829400 Weak transcription Fetal Brain Male brain
8 chr7:116798000-116829800 Weak transcription Gastric stomach
9 chr7:116798000-116850000 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr7:116798200-116866600 Weak transcription HMEC breast
11 chr7:116798400-116849800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr7:116798600-116830000 Weak transcription Brain Angular Gyrus brain
13 chr7:116800200-116830000 Weak transcription Colon Smooth Muscle Colon
14 chr7:116805200-116830000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr7:116805200-116850000 Weak transcription Psoas Muscle Psoas
16 chr7:116805400-116826200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr7:116807600-116857800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr7:116808400-116871800 Weak transcription Rectal Smooth Muscle rectum
19 chr7:116809800-116829600 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr7:116810200-116829400 Weak transcription Brain Cingulate Gyrus brain
21 chr7:116810200-116830200 Weak transcription Spleen Spleen
22 chr7:116810200-116832400 Weak transcription A549 lung
23 chr7:116810200-116850000 Weak transcription Brain Hippocampus Middle brain
24 chr7:116810400-116826200 Weak transcription NH-A brain
25 chr7:116811400-116829600 Weak transcription Brain Inferior Temporal Lobe brain
26 chr7:116811400-116830200 Weak transcription Right Ventricle heart
27 chr7:116811600-116829600 Weak transcription Ovary ovary
28 chr7:116811600-116838400 Weak transcription Pancreas Pancrea
29 chr7:116811800-116828200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr7:116811800-116830200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr7:116811800-116833200 Weak transcription NHDF-Ad bronchial
32 chr7:116812000-116829400 Weak transcription Placenta Placenta
33 chr7:116812200-116829400 Weak transcription Brain Substantia Nigra brain
34 chr7:116812200-116830000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr7:116812200-116850000 Weak transcription Hela-S3 cervix
36 chr7:116812400-116830000 Weak transcription Primary monocytes fromperipheralblood blood
37 chr7:116812400-116830800 Weak transcription HSMM muscle
38 chr7:116812800-116829200 Weak transcription Stomach Smooth Muscle stomach
39 chr7:116813000-116826200 Weak transcription Osteobl bone
40 chr7:116813400-116829200 Weak transcription Fetal Heart heart
41 chr7:116813400-116829800 Weak transcription Lung lung
42 chr7:116813600-116829400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr7:116813600-116829600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr7:116813800-116826400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr7:116813800-116829200 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr7:116813800-116829400 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr7:116813800-116829400 Weak transcription Aorta Aorta
48 chr7:116813800-116829400 Weak transcription HepG2 liver
49 chr7:116813800-116829800 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr7:116813800-116830000 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015