Variant report

Variant rs38885
Chromosome Location chr7:116830405-116830406
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116785200-116856600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr7:116787400-116834000 Weak transcription Primary hematopoietic stem cells blood
3 chr7:116793400-116830600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr7:116798000-116850000 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr7:116798200-116866600 Weak transcription HMEC breast
6 chr7:116798400-116849800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr7:116805200-116850000 Weak transcription Psoas Muscle Psoas
8 chr7:116807600-116857800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr7:116808400-116871800 Weak transcription Rectal Smooth Muscle rectum
10 chr7:116810200-116832400 Weak transcription A549 lung
11 chr7:116810200-116850000 Weak transcription Brain Hippocampus Middle brain
12 chr7:116811600-116838400 Weak transcription Pancreas Pancrea
13 chr7:116811800-116833200 Weak transcription NHDF-Ad bronchial
14 chr7:116812200-116850000 Weak transcription Hela-S3 cervix
15 chr7:116812400-116830800 Weak transcription HSMM muscle
16 chr7:116815800-116839000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr7:116817600-116849000 Weak transcription Fetal Lung lung
18 chr7:116821400-116833400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr7:116822800-116830600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr7:116824200-116867200 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr7:116825400-116859600 Weak transcription Brain Anterior Caudate brain
22 chr7:116827000-116830600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr7:116827600-116833400 Weak transcription Muscle Satellite Cultured Cells --
24 chr7:116827800-116859000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr7:116828800-116834400 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr7:116828800-116865400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr7:116829200-116831200 Strong transcription Duodenum Smooth Muscle Duodenum
28 chr7:116829200-116831200 Enhancers Fetal Heart heart
29 chr7:116829200-116831200 Strong transcription Stomach Smooth Muscle stomach
30 chr7:116829200-116831400 Strong transcription Liver Liver
31 chr7:116829200-116832000 Strong transcription K562 blood
32 chr7:116829200-116832200 Strong transcription Breast Myoepithelial Primary Cells Breast
33 chr7:116829200-116840600 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr7:116829400-116830600 Strong transcription NH-A brain
35 chr7:116829400-116830800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr7:116829400-116830800 Strong transcription Brain Substantia Nigra brain
37 chr7:116829400-116831000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr7:116829400-116831000 Strong transcription Aorta Aorta
39 chr7:116829400-116831200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr7:116829400-116831200 Strong transcription Adipose Nuclei Adipose
41 chr7:116829400-116831200 Strong transcription Brain Germinal Matrix brain
42 chr7:116829400-116831400 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr7:116829400-116831400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr7:116829400-116831400 Strong transcription Brain Cingulate Gyrus brain
45 chr7:116829400-116831400 Strong transcription Fetal Intestine Large intestine
46 chr7:116829400-116831400 Strong transcription Left Ventricle heart
47 chr7:116829400-116831400 Strong transcription HepG2 liver
48 chr7:116829400-116832000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr7:116829400-116832200 Strong transcription Placenta Placenta
50 chr7:116829400-116833200 Strong transcription GM12878-XiMat blood

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