Variant report

Variant rs38887
Chromosome Location chr7:116833455-116833456
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116785200-116856600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr7:116787400-116834000 Weak transcription Primary hematopoietic stem cells blood
3 chr7:116798000-116850000 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr7:116798200-116866600 Weak transcription HMEC breast
5 chr7:116798400-116849800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr7:116805200-116850000 Weak transcription Psoas Muscle Psoas
7 chr7:116807600-116857800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr7:116808400-116871800 Weak transcription Rectal Smooth Muscle rectum
9 chr7:116810200-116850000 Weak transcription Brain Hippocampus Middle brain
10 chr7:116811600-116838400 Weak transcription Pancreas Pancrea
11 chr7:116812200-116850000 Weak transcription Hela-S3 cervix
12 chr7:116815800-116839000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr7:116817600-116849000 Weak transcription Fetal Lung lung
14 chr7:116824200-116867200 Weak transcription Monocytes-CD14+_RO01746 blood
15 chr7:116825400-116859600 Weak transcription Brain Anterior Caudate brain
16 chr7:116827800-116859000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr7:116828800-116834400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr7:116828800-116865400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr7:116829200-116840600 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr7:116829400-116835400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr7:116829400-116836200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr7:116830400-116838600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr7:116830400-116849800 Weak transcription Fetal Brain Male brain
24 chr7:116830600-116834600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr7:116830600-116853000 Weak transcription NH-A brain
26 chr7:116830800-116834000 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr7:116830800-116837800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr7:116830800-116849800 Weak transcription Brain Substantia Nigra brain
29 chr7:116830800-116850200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr7:116830800-116859400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr7:116830800-116859600 Weak transcription Gastric stomach
32 chr7:116831000-116838200 Weak transcription Aorta Aorta
33 chr7:116831000-116838400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr7:116831000-116838400 Weak transcription Fetal Intestine Small intestine
35 chr7:116831000-116838400 Weak transcription Fetal Muscle Trunk muscle
36 chr7:116831000-116838400 Weak transcription Lung lung
37 chr7:116831000-116838400 Weak transcription Right Ventricle heart
38 chr7:116831000-116838800 Weak transcription Small Intestine intestine
39 chr7:116831000-116850200 Weak transcription Esophagus oesophagus
40 chr7:116831000-116870800 Weak transcription Colon Smooth Muscle Colon
41 chr7:116831000-116870800 Weak transcription Spleen Spleen
42 chr7:116831200-116837200 Weak transcription Fetal Heart heart
43 chr7:116831200-116837800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr7:116831200-116837800 Weak transcription Brain Angular Gyrus brain
45 chr7:116831200-116837800 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr7:116831200-116837800 Weak transcription Fetal Muscle Leg muscle
47 chr7:116831200-116838400 Weak transcription Adipose Nuclei Adipose
48 chr7:116831200-116838400 Weak transcription Fetal Stomach stomach
49 chr7:116831200-116839600 Weak transcription Ovary ovary
50 chr7:116831200-116841400 Weak transcription Brain Germinal Matrix brain

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