Variant report

Variant	rs34802524
Chromosome Location	chr18:39913363-39913364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12958459	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12958679	0.86[ASN][1000 genomes]
rs16975918	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16975919	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16975921	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34642158	0.86[ASN][1000 genomes]
rs7232300	0.86[ASN][1000 genomes]
rs7232594	0.85[ASN][1000 genomes]
rs7235999	0.88[EUR][1000 genomes]
rs7237280	0.85[ASN][1000 genomes]
rs8085980	0.90[EUR][1000 genomes]
rs8090017	0.87[EUR][1000 genomes]
rs8096564	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9947988	0.86[ASN][1000 genomes]
rs9948169	0.87[ASN][1000 genomes]
rs9959948	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9960132	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39893200-39915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:39910400-39916800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:39913000-39914000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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