Variant report

Variant	rs7235999
Chromosome Location	chr18:39909305-39909306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12958459	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12958679	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16975918	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16975919	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16975921	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1841620	0.89[AMR][1000 genomes]
rs1841621	0.89[AMR][1000 genomes]
rs1993752	0.90[AMR][1000 genomes]
rs2335780	0.89[AMR][1000 genomes]
rs34642158	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34802524	0.88[EUR][1000 genomes]
rs391148	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs413718	0.89[AMR][1000 genomes]
rs414142	0.85[AMR][1000 genomes]
rs415805	0.86[AMR][1000 genomes]
rs415810	0.87[AMR][1000 genomes]
rs421436	0.88[AMR][1000 genomes]
rs428198	0.86[AMR][1000 genomes]
rs436343	0.82[AMR][1000 genomes]
rs449040	0.89[AMR][1000 genomes]
rs454565	0.89[AMR][1000 genomes]
rs4621064	0.86[AMR][1000 genomes]
rs68001532	0.86[AMR][1000 genomes]
rs7232300	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7232594	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7237280	0.89[AMR][1000 genomes]
rs8085980	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8090017	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8096564	0.87[EUR][1000 genomes]
rs922266	0.89[AMR][1000 genomes]
rs976071	0.88[AMR][1000 genomes]
rs9947788	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9947988	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9948169	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9959948	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9960132	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9964453	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39893200-39915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:39907000-39910000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:39907400-39909600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr18:39909000-39910600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links