Variant report

Variant	rs34806329
Chromosome Location	chr1:154387936-154387937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154376358..154381143-chr1:154387661..154394028,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228013	Chromatin interaction
ENSG00000160712	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12090237	1.00[EUR][1000 genomes]
rs1488085	1.00[AFR][1000 genomes]
rs16835877	1.00[AFR][1000 genomes]
rs55886061	1.00[EUR][1000 genomes]
rs72696231	1.00[AFR][1000 genomes]
rs72696240	1.00[AFR][1000 genomes]
rs72696254	1.00[AFR][1000 genomes]
rs72696264	1.00[AFR][1000 genomes]
rs72698116	1.00[EUR][1000 genomes]
rs72698118	1.00[EUR][1000 genomes]
rs72698123	1.00[EUR][1000 genomes]
rs72698126	1.00[EUR][1000 genomes]
rs72698128	1.00[EUR][1000 genomes]
rs7411976	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154381000-154390800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:154381000-154390800	Weak transcription	NHLF	lung
3	chr1:154381200-154389000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:154381200-154390800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:154381400-154389000	Weak transcription	A549	lung
6	chr1:154381400-154390400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:154381400-154390600	Weak transcription	NHDF-Ad	bronchial
8	chr1:154381600-154390200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:154381800-154389400	Weak transcription	Colonic Mucosa	Colon
10	chr1:154382000-154390800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:154382000-154390800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:154382400-154391600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:154382600-154390600	Weak transcription	Brain Angular Gyrus	brain
14	chr1:154383000-154390000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr1:154383000-154402800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:154383400-154389000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:154383400-154389200	Weak transcription	Esophagus	oesophagus
18	chr1:154383400-154389600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:154383400-154390800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:154383600-154391200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:154384200-154389800	Weak transcription	NHEK	skin
22	chr1:154384200-154390000	Weak transcription	HMEC	breast
23	chr1:154384200-154392000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:154384400-154389200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:154384400-154389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:154384400-154390800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:154384800-154388400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr1:154385200-154388000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr1:154385400-154389200	Enhancers	Stomach Smooth Muscle	stomach
30	chr1:154385800-154390600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:154386000-154388400	Enhancers	Colon Smooth Muscle	Colon
32	chr1:154386000-154391000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:154386200-154388200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
34	chr1:154386200-154388600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr1:154386200-154390600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:154386400-154388200	Enhancers	Right Ventricle	heart
37	chr1:154386400-154390600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:154386400-154391200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:154386600-154389000	Weak transcription	Stomach Mucosa	stomach
40	chr1:154386600-154390800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr1:154386800-154388000	Flanking Active TSS	Liver	Liver
42	chr1:154386800-154388000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr1:154386800-154389200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:154387000-154388000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr1:154387000-154389600	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:154387000-154390000	Enhancers	Brain Anterior Caudate	brain
47	chr1:154387000-154390800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:154387000-154390800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr1:154387400-154388000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:154387400-154389000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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