Variant report

Variant rs55886061
Chromosome Location chr1:154383261-154383262
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154380200-154383400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
2 chr1:154380400-154383400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
3 chr1:154380400-154384000 Enhancers Primary B cells from peripheral blood blood
4 chr1:154380400-154387000 Weak transcription Pancreas Pancrea
5 chr1:154380600-154384000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr1:154380800-154384000 Flanking Active TSS Liver Liver
7 chr1:154381000-154383400 Enhancers Primary hematopoietic stem cells short term culture blood
8 chr1:154381000-154383400 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr1:154381000-154383400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:154381000-154383400 Enhancers Brain Hippocampus Middle brain
11 chr1:154381000-154384000 Enhancers Colon Smooth Muscle Colon
12 chr1:154381000-154384000 Enhancers Skeletal Muscle Male skeletal muscle
13 chr1:154381000-154384000 Weak transcription Osteobl bone
14 chr1:154381000-154390800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:154381000-154390800 Weak transcription NHLF lung
16 chr1:154381200-154383400 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr1:154381200-154383400 Enhancers Primary B cells from cord blood blood
18 chr1:154381200-154383400 Enhancers Duodenum Smooth Muscle Duodenum
19 chr1:154381200-154383800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:154381200-154383800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:154381200-154383800 Weak transcription HMEC breast
22 chr1:154381200-154383800 Weak transcription NHEK skin
23 chr1:154381200-154384000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr1:154381200-154384000 Enhancers Duodenum Mucosa Duodenum
25 chr1:154381200-154384000 Enhancers Rectal Smooth Muscle rectum
26 chr1:154381200-154384400 Enhancers Primary T helper naive cells from peripheral blood blood
27 chr1:154381200-154386200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr1:154381200-154386400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:154381200-154386400 Weak transcription Gastric stomach
30 chr1:154381200-154387600 Genic enhancers Primary monocytes fromperipheralblood blood
31 chr1:154381200-154389000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:154381200-154390800 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:154381400-154384000 Enhancers Brain Anterior Caudate brain
34 chr1:154381400-154385200 Weak transcription Stomach Mucosa stomach
35 chr1:154381400-154389000 Weak transcription A549 lung
36 chr1:154381400-154390400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:154381400-154390600 Weak transcription NHDF-Ad bronchial
38 chr1:154381600-154385000 Enhancers Stomach Smooth Muscle stomach
39 chr1:154381600-154390200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:154381800-154389400 Weak transcription Colonic Mucosa Colon
41 chr1:154382000-154386800 Weak transcription Psoas Muscle Psoas
42 chr1:154382000-154390800 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:154382000-154390800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr1:154382200-154383400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
45 chr1:154382200-154384200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:154382200-154387000 Weak transcription Brain Inferior Temporal Lobe brain
47 chr1:154382400-154383400 Enhancers Brain Cingulate Gyrus brain
48 chr1:154382400-154383400 Enhancers Right Atrium heart
49 chr1:154382400-154391600 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr1:154382600-154383400 Enhancers Primary T cells fromperipheralblood blood

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