Variant report

Variant	rs34808473
Chromosome Location	chr9:104222542-104222543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104220056..104222734-chr9:104292272..104293989,2	K562	blood:
2	chr9:104221464..104223281-chr9:104260800..104263635,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10989510	0.85[EUR][1000 genomes]
rs10989511	0.87[EUR][1000 genomes]
rs10989514	0.89[EUR][1000 genomes]
rs10989517	0.89[EUR][1000 genomes]
rs13283255	0.85[EUR][1000 genomes]
rs13284199	0.85[EUR][1000 genomes]
rs13297805	0.85[EUR][1000 genomes]
rs34160569	0.85[EUR][1000 genomes]
rs34664558	0.85[EUR][1000 genomes]
rs71491792	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:104217000-104227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:104218200-104223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:104218600-104228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:104218800-104223400	Weak transcription	NH-A	brain
6	chr9:104221200-104223400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:104221200-104224400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:104221200-104225200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:104221400-104223000	Weak transcription	Fetal Intestine Large	intestine
10	chr9:104221400-104223400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:104221400-104223600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:104221400-104227200	Weak transcription	Liver	Liver
13	chr9:104221400-104227400	Weak transcription	Fetal Intestine Small	intestine
14	chr9:104221800-104223200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:104221800-104223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:104221800-104223600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:104221800-104224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:104221800-104227600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:104221800-104227600	Weak transcription	NHLF	lung
20	chr9:104221800-104235000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:104222000-104223000	Weak transcription	Stomach Mucosa	stomach
22	chr9:104222000-104223000	Weak transcription	HepG2	liver
23	chr9:104222000-104236400	Weak transcription	H9 Cell Line	embryonic stem cell

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