Variant report

Variant	rs34808895
Chromosome Location	chr5:179703413-179703414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179696724..179698637-chr5:179701872..179704332,2	K562	blood:
2	chr5:179701944..179704923-chr5:179710150..179711887,3	MCF-7	breast:
3	chr5:179698719..179700980-chr5:179701613..179704938,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34147472	1.00[AMR][1000 genomes]
rs34461510	1.00[AMR][1000 genomes]
rs35089249	1.00[AMR][1000 genomes]
rs35106284	1.00[AMR][1000 genomes]
rs35288370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35568530	1.00[AMR][1000 genomes]
rs35765078	1.00[AMR][1000 genomes]
rs35782688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35886948	1.00[AMR][1000 genomes]
rs36052878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58748693	1.00[AMR][1000 genomes]
rs58779877	1.00[AMR][1000 genomes]
rs58781679	1.00[AMR][1000 genomes]
rs61519718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
3	chr5:179660800-179706800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:179673600-179705400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:179681800-179705600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:179691200-179706200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:179692800-179705000	Weak transcription	Stomach Mucosa	stomach
9	chr5:179692800-179718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:179693800-179709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:179694800-179717600	Weak transcription	HUVEC	blood vessel
12	chr5:179695400-179704200	Weak transcription	HepG2	liver
13	chr5:179695600-179704200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:179695800-179706200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:179696200-179704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:179696400-179714800	Weak transcription	Fetal Brain Male	brain
17	chr5:179697200-179704000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:179697600-179710800	Strong transcription	Placenta	Placenta
19	chr5:179698400-179710200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:179698400-179710400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr5:179699000-179704600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr5:179699000-179705400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:179699000-179705600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:179699000-179707000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:179699000-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:179699200-179707400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:179699400-179704800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr5:179699600-179704200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:179699600-179704800	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr5:179699600-179710600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr5:179699800-179705400	ZNF genes & repeats	Lung	lung
32	chr5:179699800-179707200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr5:179699800-179707600	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr5:179699800-179711400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr5:179699800-179712600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:179700000-179704000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:179700000-179704000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:179700000-179706800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr5:179700000-179711600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
40	chr5:179700200-179704200	Weak transcription	Fetal Brain Female	brain
41	chr5:179700200-179710800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr5:179700400-179704000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr5:179700600-179712600	Strong transcription	Primary T cells from cord blood	blood
44	chr5:179700800-179704200	Weak transcription	Right Ventricle	heart
45	chr5:179700800-179711400	Strong transcription	Fetal Thymus	thymus
46	chr5:179701000-179704000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr5:179701000-179707200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr5:179701200-179704600	ZNF genes & repeats	Ovary	ovary
49	chr5:179701200-179710800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:179701400-179704600	ZNF genes & repeats	Primary B cells from cord blood	blood

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