Variant report

Variant	rs36052878
Chromosome Location	chr5:179702122-179702123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:179696724..179698637-chr5:179701872..179704332,2	K562	blood:
2	chr5:179701944..179704923-chr5:179710150..179711887,3	MCF-7	breast:
3	chr5:179700884..179702709-chr5:179716441..179719265,2	MCF-7	breast:
4	chr5:179698936..179702470-chr5:179704973..179707068,4	MCF-7	breast:
5	chr5:179497902..179499862-chr5:179700119..179702534,2	K562	blood:
6	chr5:179698719..179700980-chr5:179701613..179704938,3	MCF-7	breast:
7	chr5:179699592..179702150-chr5:179709663..179711352,2	K562	blood:
8	chr5:179691444..179693409-chr5:179700138..179702183,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000113269	Chromatin interaction
ENSG00000050748	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34147472	1.00[AMR][1000 genomes]
rs34461510	1.00[AMR][1000 genomes]
rs34808895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35089249	1.00[AMR][1000 genomes]
rs35106284	1.00[AMR][1000 genomes]
rs35288370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35568530	1.00[AMR][1000 genomes]
rs35765078	1.00[AMR][1000 genomes]
rs35782688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35886948	1.00[AMR][1000 genomes]
rs58748693	1.00[AMR][1000 genomes]
rs58779877	1.00[AMR][1000 genomes]
rs58781679	1.00[AMR][1000 genomes]
rs61519718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
3	chr5:179656600-179703000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr5:179660800-179706800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:179673600-179705400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:179677000-179703000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:179681800-179705600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:179691200-179706200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:179692800-179705000	Weak transcription	Stomach Mucosa	stomach
11	chr5:179692800-179718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:179693800-179709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:179694200-179702200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:179694200-179702400	Weak transcription	Brain Angular Gyrus	brain
15	chr5:179694200-179702800	Weak transcription	Hela-S3	cervix
16	chr5:179694800-179717600	Weak transcription	HUVEC	blood vessel
17	chr5:179695400-179702200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:179695400-179704200	Weak transcription	HepG2	liver
19	chr5:179695600-179704200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:179695800-179706200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:179696200-179704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:179696400-179714800	Weak transcription	Fetal Brain Male	brain
23	chr5:179696800-179702200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:179697200-179702600	Weak transcription	Brain Anterior Caudate	brain
25	chr5:179697200-179704000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr5:179697600-179703000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr5:179697600-179710800	Strong transcription	Placenta	Placenta
28	chr5:179698200-179702600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:179698200-179703000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr5:179698400-179702800	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr5:179698400-179703000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:179698400-179703200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr5:179698400-179703200	ZNF genes & repeats	A549	lung
34	chr5:179698400-179710200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:179698400-179710400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr5:179698800-179703000	ZNF genes & repeats	Aorta	Aorta
37	chr5:179699000-179702600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr5:179699000-179702800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:179699000-179702800	ZNF genes & repeats	Esophagus	oesophagus
40	chr5:179699000-179704600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr5:179699000-179705400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:179699000-179705600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:179699000-179707000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:179699000-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:179699200-179702200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:179699200-179707400	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:179699400-179702600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr5:179699400-179702800	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr5:179699400-179704800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
50	chr5:179699600-179704200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links