Variant report

Variant	rs34812579
Chromosome Location	chr7:117243943-117243944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34362542	1.00[AMR][1000 genomes]
rs34577885	0.83[AFR][1000 genomes]
rs34644747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34689837	1.00[AMR][1000 genomes]
rs34863610	1.00[AMR][1000 genomes]
rs36026445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117233000-117245000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:117236200-117244800	Weak transcription	Pancreas	Pancrea
3	chr7:117236200-117245600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:117236600-117245600	Weak transcription	Colonic Mucosa	Colon
5	chr7:117236800-117244800	Weak transcription	Fetal Intestine Large	intestine
6	chr7:117237600-117245000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117240600-117244800	Weak transcription	A549	lung
8	chr7:117242400-117244800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:117243400-117244000	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr7:117243600-117244000	Enhancers	Fetal Thymus	thymus
11	chr7:117243600-117244200	Enhancers	Dnd41	blood
12	chr7:117243800-117244000	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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