Variant report

Variant	rs34822078
Chromosome Location	chr7:26344001-26344002
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26343995..26346313-chr7:26352554..26355349,2	K562	blood:
2	chr7:26330256..26333180-chr7:26342684..26345768,4	K562	blood:
3	chr7:26330233..26332997-chr7:26343202..26346610,3	MCF-7	breast:
4	chr7:26339720..26342269-chr7:26343705..26346837,3	MCF-7	breast:
5	chr7:26239536..26242130-chr7:26342791..26345113,2	MCF-7	breast:
6	chr7:26343922..26347367-chr7:26351241..26354054,3	K562	blood:
7	chr7:26340732..26342659-chr7:26342750..26344382,2	MCF-7	breast:
8	chr7:26337033..26341522-chr7:26343910..26346140,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10464319	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499574	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13222190	0.91[ASN][1000 genomes]
rs13223339	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13223506	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13227895	0.85[ASN][1000 genomes]
rs13229994	0.92[ASN][1000 genomes]
rs13238680	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13243412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153429	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34272723	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34319640	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34809078	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35255654	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35424926	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4722590	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6953792	0.88[ASN][1000 genomes]
rs6975395	0.95[ASN][1000 genomes]
rs9648323	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26332400-26347000	Weak transcription	HMEC	breast
2	chr7:26332600-26347400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:26332600-26347400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:26332800-26346200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:26332800-26346400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:26332800-26346600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:26333400-26344600	Weak transcription	Placenta	Placenta
8	chr7:26333600-26346600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:26333600-26351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:26333800-26346800	Weak transcription	Pancreas	Pancrea
11	chr7:26334200-26346200	Weak transcription	K562	blood
12	chr7:26334600-26344800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:26334600-26344800	Weak transcription	Thymus	Thymus
14	chr7:26335000-26344600	Weak transcription	Fetal Thymus	thymus
15	chr7:26335000-26344800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:26335000-26353000	Weak transcription	GM12878-XiMat	blood
17	chr7:26335200-26344800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:26335200-26344800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:26335200-26344800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:26342000-26344600	Weak transcription	Primary T cells from cord blood	blood
22	chr7:26342200-26344200	Weak transcription	Liver	Liver
23	chr7:26342200-26345000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr7:26342200-26347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:26342600-26344600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr7:26342600-26346200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:26342600-26347600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:26342600-26348200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr7:26342800-26344600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:26342800-26344600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:26343000-26345000	Enhancers	HepG2	liver
32	chr7:26343000-26346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:26343200-26344200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr7:26343200-26344600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:26343200-26344800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:26343200-26348200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr7:26343200-26348200	Genic enhancers	Primary B cells from peripheral blood	blood
38	chr7:26343200-26353000	Weak transcription	Spleen	Spleen
39	chr7:26343200-26355800	Weak transcription	Fetal Intestine Small	intestine
40	chr7:26343400-26344600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:26343400-26346600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:26343600-26344400	Enhancers	Primary hematopoietic stem cells	blood
43	chr7:26343600-26344800	Weak transcription	Adipose Nuclei	Adipose
44	chr7:26343800-26345000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:26344000-26344400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:26344000-26345800	Flanking Active TSS	Primary B cells from cord blood	blood

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