Variant report

Variant	rs13222190
Chromosome Location	chr7:26328861-26328862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26224902..26232884-chr7:26322008..26332976,29	K562	blood:
2	chr7:26318088..26320982-chr7:26326955..26329632,2	MCF-7	breast:
3	chr7:26224902..26232884-chr7:26322942..26334107,28	K562	blood:
4	chr7:26327674..26329396-chr7:26329540..26331582,2	K562	blood:
5	chr7:26239497..26241674-chr7:26327759..26329470,2	K562	blood:
6	chr7:26237070..26238753-chr7:26328239..26331209,2	MCF-7	breast:
7	chr7:26326796..26329794-chr7:26331207..26332723,2	MCF-7	breast:
8	chr7:26239487..26241674-chr7:26327759..26331370,3	K562	blood:
9	chr7:26238789..26244149-chr7:26328226..26335284,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10227678	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10236496	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10273457	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10275783	0.86[CEU][hapmap]
rs10464319	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs10499574	0.84[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs11525780	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12671127	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12700720	0.92[CEU][hapmap]
rs13223339	0.87[ASN][1000 genomes]
rs13223506	0.87[ASN][1000 genomes]
rs13227895	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13228053	0.83[EUR][1000 genomes]
rs13229994	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13233547	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13238680	0.87[ASN][1000 genomes]
rs13243412	0.87[ASN][1000 genomes]
rs17153429	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562786	0.84[EUR][1000 genomes]
rs2562795	0.82[EUR][1000 genomes]
rs28413943	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28653301	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28682465	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs33974860	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34272723	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34315589	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34319640	0.87[ASN][1000 genomes]
rs34695308	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34809078	0.85[ASN][1000 genomes]
rs34822078	0.91[ASN][1000 genomes]
rs35255654	0.87[ASN][1000 genomes]
rs35424926	0.85[ASN][1000 genomes]
rs4722590	0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs62448361	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67157703	0.80[EUR][1000 genomes]
rs67229315	0.82[EUR][1000 genomes]
rs6953792	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6970361	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6975395	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9638833	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9639532	0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9648323	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs972158	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26324400-26330800	Weak transcription	Placenta	Placenta
2	chr7:26326400-26330800	Weak transcription	HepG2	liver
3	chr7:26328400-26331000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26328600-26331000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:26328600-26331200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links