Variant report

Variant	rs6970361
Chromosome Location	chr7:26321331-26321332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26236967..26245040-chr7:26316050..26322188,15	MCF-7	breast:
2	chr7:26225358..26228940-chr7:26318718..26321554,4	K562	blood:
3	chr7:26241276..26242908-chr7:26320384..26322237,2	K562	blood:
4	chr7:26234755..26243649-chr7:26316786..26321454,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10227678	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10236496	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11525780	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12671127	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12700720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13222190	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13227895	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13228053	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229994	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13233547	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17153429	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28413943	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28653301	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28682465	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28831402	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33974860	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34272723	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34315589	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34695308	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34905204	0.87[AMR][1000 genomes]
rs55699431	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62448361	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67157703	0.93[EUR][1000 genomes]
rs67229315	0.91[EUR][1000 genomes]
rs6942724	0.90[EUR][1000 genomes]
rs6953792	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6975395	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7797558	0.92[EUR][1000 genomes]
rs9638833	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9639532	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9648323	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26318200-26321800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26319400-26321600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:26319400-26321800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26319400-26324000	Weak transcription	Placenta	Placenta
5	chr7:26319400-26326600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:26319600-26321600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26319600-26321800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:26319600-26322200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:26320000-26324000	Weak transcription	HepG2	liver
10	chr7:26321000-26324200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links