Variant report

Variant	rs28413943
Chromosome Location	chr7:26325492-26325493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26224902..26232884-chr7:26322008..26332976,29	K562	blood:
2	chr7:26224902..26232884-chr7:26322942..26334107,28	K562	blood:
3	chr7:26220379..26222750-chr7:26324403..26326556,2	MCF-7	breast:
4	chr7:26237933..26242335-chr7:26322799..26328116,8	MCF-7	breast:
5	chr7:26324783..26327312-chr7:26329336..26332307,3	K562	blood:
6	chr7:26236386..26241823-chr7:26322979..26327139,7	K562	blood:
7	chr7:26237304..26242756-chr7:26323009..26328142,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10227678	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10236496	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10273457	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11525780	0.84[EUR][1000 genomes]
rs12671127	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13222190	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13227895	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13228053	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13229994	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13233547	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17153429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28653301	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28682465	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28831402	0.87[ASN][1000 genomes]
rs33974860	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34272723	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34315589	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34695308	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62448361	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67157703	0.84[EUR][1000 genomes]
rs67229315	0.82[EUR][1000 genomes]
rs6942724	0.81[EUR][1000 genomes]
rs6953792	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6970361	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6975395	0.88[EUR][1000 genomes]
rs7797558	0.83[EUR][1000 genomes]
rs9638833	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9639532	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9648323	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26319400-26326600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:26322400-26326800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:26322600-26326800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:26324000-26326400	Enhancers	HepG2	liver
5	chr7:26324400-26330800	Weak transcription	Placenta	Placenta

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