Variant report

Variant	rs7797558
Chromosome Location	chr7:26310975-26310976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26239171..26243202-chr7:26305384..26313158,8	K562	blood:
2	chr7:26302873..26304552-chr7:26310910..26313411,2	K562	blood:
3	chr7:26236285..26238514-chr7:26310546..26312863,2	K562	blood:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10227678	0.92[EUR][1000 genomes]
rs10236496	0.92[EUR][1000 genomes]
rs10271235	0.81[ASN][1000 genomes]
rs10273457	0.85[EUR][1000 genomes]
rs10275783	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11525780	0.84[EUR][1000 genomes]
rs12538243	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12671127	0.93[EUR][1000 genomes]
rs13228053	0.88[EUR][1000 genomes]
rs13233547	0.89[EUR][1000 genomes]
rs2562786	0.80[EUR][1000 genomes]
rs28413943	0.83[EUR][1000 genomes]
rs28653301	0.81[EUR][1000 genomes]
rs28682465	0.81[EUR][1000 genomes]
rs28831402	0.82[EUR][1000 genomes]
rs33974860	0.81[EUR][1000 genomes]
rs34315589	0.91[EUR][1000 genomes]
rs34695308	0.81[EUR][1000 genomes]
rs62448361	0.92[EUR][1000 genomes]
rs67157703	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67229315	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6942724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6953792	0.83[EUR][1000 genomes]
rs6970361	0.92[EUR][1000 genomes]
rs9638833	0.91[EUR][1000 genomes]
rs9639532	0.90[EUR][1000 genomes]
rs9648323	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26310800-26311000	Enhancers	Duodenum Mucosa	Duodenum

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